Conference Abstracts

Conference Abstracts

2022

  1. Baltoumas, F.A., Zafeiropoulou, S., Karatzas, E., Paragkamian, S., Thanati, F., Iliopoulos, I., Eliopoulos, A.G., Schneider, R., Jensen, L.J., Pafilis, E., Pavlopoulos, G.A. “OnTheFly2.0: a text-mining web application automated biomedical entity recognition, document annotation, network and functional enrichment analysis “. 9th International Work-Conference on Bioinformatics & Biomedical Engineering – IWBBIO-2022, Gran Canaria, Spain, June 27-30, 2022.
  2. Karatzas, E.,Baltoumas, F.A.,  & Pavlopoulos, G.A. “Visualization of 3D multilayered networks interactively using Arena3dweb”, 9th International Work-Conference on Bioinformatics & Biomedical Engineering – IWBBIO-2022, Gran Canaria, Spain, June 27-30, 2022.

2021

  1. Karatzas, E., Baltoumas, F.A.,  & Pavlopoulos, G.A. “Visualization of 3D multilayered networks interactively using Arena3dweb”, 9th International Conference of MIKROBIOKOSMOS, Agricultural University of Athens, Athens, Greece, December 16-18, 2021.
  2. Baltoumas, F.A., Zafeiropoulou, S., Karatzas, E., Paragkamian, S., Thanati, F., Iliopoulos, I., Eliopoulos, A.G., Schneider, R., Jensen, L.J., Pafilis, E., Pavlopoulos, G.A. “OnTheFly2.0: a text-mining web application automated biomedical entity recognition, document annotation, network and functional enrichment analysis “. 9th International Conference of MIKROBIOKOSMOS, Agricultural University of Athens, Athens, Greece, December 16-18, 2021.
  3. Karatzas, E., Baltoumas, F.A.,  Kokoli, M. & Pavlopoulos, G.A. “Visualization of interactive 3D networks using Arena3dweb”, 15th Conference of the Hellenic Society for Computational Biology & Bioinformatics – HSCBB21, Hellenic Pasteur Institute, Athens, December 10-11, 2021.
  4. Baltoumas, F.A., Zafeiropoulou, S., Karatzas, E., Paragkamian, S., Thanati, F., Iliopoulos, I., Eliopoulos, A.G., Schneider, R., Jensen, L.J., Pafilis, E., Pavlopoulos, G.A. “OnTheFly2.0: automated biomedical entity recognition, document annotation, network and functional enrichment analysis from multiple sources”. 15th Conference of the Hellenic Society for Computational Biology & Bioinformatics – HSCBB21, Hellenic Pasteur Institute, Athens, December 10-11, 2021.
  5. Karatzas, E., Baltoumas, F.A.,  Schneider, R. & Pavlopoulos, G.A. “Visualizing 3D multilayered networks interactively with Arena3Dweb”, Hbioinfo Bridge 2020-21, Thessaloniki, Greece, June 2-4, 2021.
  6. Theodoropoulou, M.K., Papandreou, N.C., Nasi, G.I., Baltoumas, F.A. & Iconomidou, V.A. “Computational Studies of peptides-inhibitors of beta-amyloid aggregation in Alzheimer’s Disease”, 18th Hellenic Symposium on Medicinal Chemistry / HSMC, Athens, Greece, February 25-27, 2021.

2019

  1. Oikonomou, E., D., Baltoumas, F.A., Papandreou, N.C & Iconomidou, V.A. “Computational Studies of Interactions between GPCRs and RAMPs”, 41st Annual Conference of the Hellenic Society for Biological Sciences – HSBS, Katerini, Greece, May 9-11, 2019.
  2. Rizou, A.K.I., Nasi, G.I., Baltoumas, F.A., Tsiolaki, P.L. & Iconomidou, V.A. “Exploring the interactions of amyloidogenic peptide-analogues in silkmoth chorion proteins”, 41st Annual Conference of the Hellenic Society for Biological Sciences – HSBS, Katerini, Greece, May 9-11, 2019.

2018

  1. Baltoumas, F.A., Hamodrakas, S.J. & Iconomidou, V.A. “The Gram-Negative Outer Membrane Modeler (GNOMM): automated building and simulation of LPS-rich bacterial outer membranes”, 9th International Conference of the Hellenic Crystallographic Association (HeCrA), University of Patras, Greece, 05-07 October 2018.
  2. Tsiolaki, P.L., Nasi, G.I., Baltoumas, F.A., Louros, N.N., Magafa, V., Hamodrakas, S.J. & Iconomidou, V.A. “Unravelling the Unexpected Amyloidogenicity of the αCGRP hormone”, The XVIth International Symposium on Amyloidosis, KKR Hotel Kumamoto, Kumamoto, Japan, March 26-29, 2018.
  3. Spanogiannis, G., Baltoumas, F.A., Litou, Z.I., Hamodrakas, S.J. & Iconomidou, V.A. “A Novel Method for the Detection and Classification of Receptor Tyrosine Kinases (RTKs) using profile Hidden Markov Models”, 40th Annual Conference of the Hellenic Society for Biological Sciences – HSBS, Veria, Greece, May 24-26, 2018.

2017

  1. Baltoumas, F.A., Iconomidou, V.A. & Hamodrakas, S.J. “A Novel Method for Modeling Lipopolysaccharide-Rich Outer Membranes in Gram Negative Bacteria”, 12th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB17, Hellenic Pasteur Institute, Athens, Greece, October 11-13, 2017.
  2. Sofras, D., Baltoumas, F.A., Hamodrakas, S.J. & Iconomidou, V.A. “Network Analysis of Protein-Protein Interactions in the Nuclear Envelope”, 12th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB17, Hellenic Pasteur Institute, Athens, Greece, October 11-13, 2017.
  3. Nasi, G.I., Tsiolaki, P.L., Baltoumas, F.A., Louros, N.N., Magafa, V., Hamodrakas, S.J. & Iconomidou, V.A. “Monitoring the Dynamic Behavior of Human αCGRP aggregates”, 12th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB17, Hellenic Pasteur Institute, Athens, Greece, October 11-13, 2017.
  4. Apostolakou, A.E., Baltoumas, F.A., Hamodrakas, S.J. & Iconomidou, V.A. “Using cell expression evidence to refine the study of G-protein coupled receptor signaling networks”, 12th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB17, Hellenic Pasteur Institute, Athens, Greece, October 11-13, 2017.

2016

  1. Baltoumas, F.A., Theodoropoulou, M.C., Litou, Z.I. & Hamodrakas, S.J., “Combining Molecular Dynamics Simulations with Network Theory for the Structural, Dynamic and Functional Analysis of Opioid Receptor Dimers”, Joint International Conference of the Hellenic Crystallographic Association and the Hellenic Society for Computational Biology and Bioinformatics – HeCrAHSCBB16, Agricultural University of Athens, Athens, Greece, October 7-9, 2016.
  2. Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “The membrane shapes the signal: using protein-lipid interactions as predictors in G-protein coupled receptor oligomerization”, 2nd International Summer School: “From Structural Biology to Drug Discovery” 2016, Villa Aventuro, Anavissos, Greece, September 3rd, 2016.

2015

  1. Gavriilidou, M.G., Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “G-protein coupled receptors and heterotrimeric G-proteins: evaluating different strategies in predicting protein–protein interactions through sequence co-evolution”, 10th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB15, Biomedical Research Foundation Academy of Athens (BRFAA), Athens, Greece, October 9-11, 2015.
  2. Louros, N.N., Baltoumas, F.A., Tsiolaki, P.L., Sillis, A., Radulovic, V., Dimitrijevic, M., Litou, Z.I., Hamodrakas, S.J. & Iconomidou, V.A., “Assessing the Aggregation Dynamics of human Islet Amyloid Polypeptide and its non-Amyloidogenic variants through Molecular Dynamics Simulations”, 10th Conference of the Hellenic Society for Computational Biology and Bioinformatics– HSCBB15, Biomedical Research Foundation Academy of Athens (BRFAA), Athens, Greece, October 9-11, 2015.
  3. Louros, N.N., Baltoumas, F.A., Hamodrakas, S.J. & Iconomidou, V.A., “A β-Solenoid Model of the Pmel17 Repeat Domain: Insights to the Formation of Functional Amyloid fibrils”, 10th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB15, Biomedical Research Foundation Academy of Athens (BRFAA), Athens, Greece, October 9-11, 2015.
  4. Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “Exploring the effects of cholesterol upon a G-protein coupled receptor heterodimer implicated in Parkinson’s disease”, 10th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB15, Biomedical Research Foundation Academy of Athens (BRFAA), Athens, Greece, October 9-11, 2015.
  5. Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “Evaluating the Structural and Functional Aspects of G-protein coupled Receptor Oligomerization through Molecular Dynamics Simulations”, 1st International Summer School: “From Structural Biology to Drug Discovery” 2015, Villa Aventuro, Anavissos, Greece, September 5th, 2015.
  6. Stavroulaki, G.D., Baltoumas, F.A., Theodoropoulou, M.C., Iconomidou, V.A. & Hamodrakas, S.J., “Structural Studies of GPCRs using Computational Methods”, 37th Annual Conference of the Hellenic Society for Biological Sciences – HSBS, Volos, Greece, May 21-23, 2015.

2014

  1. Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “Evaluating the nature of oligomeric interactions in G-protein coupled Receptors with molecular simulations”, 9th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB14, Agricultural University of Athens, Athens, Greece, October 10-12, 2014.

2012

  1. Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “Overlapping interaction sites on the surface of the Gα subunits of G-proteins”, 7th Conference of the Hellenic Society for Computational Biology and Bioinformatics – HSCBB12, IMBB – FORTH, Herakleion, Crete, Greece, October 4-6, 2012.

2011

  1. Baltoumas, F.A., Theodoropoulou, M.C. & Hamodrakas, S.J., “Studies of interactions between GPCRs, G-proteins and effectors”. 33rd Annual Conference of the Hellenic Society for Biological Sciences – HSBS, Edessa, Greece, May 21-23, 2011.